PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa08g027800.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family C2H2
Protein Properties Length: 384aa    MW: 42510.1 Da    PI: 8.1305
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa08g027800.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.54.9e-0581103123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     y+C+ C+k Fs++  L  H++ H
  Csa08g027800.1  81 YTCHFCKKGFSTSQALGGHQNAH 103
                     9*******************988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.78E-778108No hitNo description
Gene3DG3DSA:3.30.160.605.0E-579107IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.82281108IPR007087Zinc finger, C2H2
PfamPF139122.2E-481105IPR007087Zinc finger, C2H2
PROSITE patternPS00028083103IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 384 aa     Download sequence    Send to blast
MENQAMSSSG SSTPKPEKLK GVVVAMEKSK EKATKNTDLK LGSPQEVSSD RRTKNLCFGS  60
SDVRRGREIM KIYPSKSNKI YTCHFCKKGF STSQALGGHQ NAHKQEREWD KKRKEMEADF  120
PGLAFLNPYL DKPHILLGGY SQDALSNENH LGITLDPFKR LIYPSFNRGV LGGLADMNMT  180
VVPCVTPTRF STSQALGGHQ NAHKQEREWD KKRKEMEADF PGLAFLNPYL DKPHILLGGY  240
SQDALSNENH LGITLDPFKR LIYPSFNRGV LGGLADMNMT VVPCVTPTRF FTGNASTNDT  300
ASRVPDPLPK RSCPLISRNV YPFLPPRATK LSSDVALQEN VLTEENFISK IGTNNVVEID  360
DDDDIQPEED NSKSGGIDLS LSL*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0073990.0AC007399.1 Arabidopsis thaliana BAC F14I23 from chromosome V near 69 cM, complete sequence.
GenBankCP0026880.0CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010421563.11e-139PREDICTED: uncharacterized protein LOC104707012
TrEMBLR0FJL21e-111R0FJL2_9BRAS; Uncharacterized protein
STRINGfgenesh2_kg.6__2677__AT5G27880.11e-108(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM63631842
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G27880.11e-108C2H2 family protein